Processed Data:
  • Tree shrew genome sequences
  • Tree shrew CDS sequences
  • Tree shrew protein sequences
  • Tree shrew function annotation information
  • Tree shrew gtf file
  • NCBI annotation information
  • Gene list:
  • Tree shrew pseudogene information
  • Raw Genome Data :
  • Raw sequencing reads of tree shrew genome
  • Raw RNA-seq Data :
    Sample NameSubmissionGEO_IDTSDB_ID ReferenceDescription
    Brain 1KIZSRX157964Fan Y et al, 2013Brain tissue RNA-seq
    Brain 2KIZSRX3358316Fan Y et al, 2018Brain tissue RNA-seq
    Brain 3KIZSRX3358319Fan Y et al, 2018Brain tissue RNA-seq
    Cortex 1KIZSRX3341772Fan Y et al, 2018Cortex tissue RNA-seq
    Cortex 2KIZSRX3358317Fan Y et al, 2018Cortex tissue RNA-seq
    Hippocampus 1KIZSRX3358315Fan Y et al, 2018Hippocampus tissue RNA-seq
    Hippocampus 2KIZSRX3358318Fan Y et al, 2018Hippocampus tissue RNA-seq
    HeartKIZSRX157962Fan Y et al, 2013Heart tissue RNA-seq
    PancreasKIZSRX157961Fan Y et al, 2013Pancreas tissue RNA-seq
    KidneyKIZSRX157960Fan Y et al, 2013Kidney tissue RNA-seq
    OvaryKIZSRX157966Fan Y et al, 2013Ovary tissue RNA-seq
    TestisKIZSRX157965Fan Y et al, 2013Testis tissue RNA-seq
    LiverKIZSRX157963Fan Y et al, 2013Liver tissue RNA-seq
    Liver (control)KIZSRX1017387RNA-seq reveal liver changes in the early stage of diabetes in tree shrew, control
    Liver (diabetes)KIZSRX1009946RNA-seq reveal liver changes in the early stage of diabetes in tree shrew
    HepatocyteNIBSSRX125163Yan H et al, 2012Hepatocyte RNA-seq
    DGC-enriched Thy1- cells 1KIZTSDB2017R01Li C-H et al, 2017differentiating germ cell (DGC) -enriched Thy1? cells
    DGC-enriched Thy1- cells 2KIZTSDB2017R02Li C-H et al, 2017differentiating germ cell (DGC) -enriched Thy1? cells
    SSC-enriched Thy1+ cells 1KIZTSDB2017R03Li C-H et al, 2017spermatogonial stem cells (SSC) -enriched Thy1+ cells
    SSC-enriched Thy1+ cells 2KIZTSDB2017R04Li C-H et al, 2017spermatogonial stem cells (SSC) -enriched Thy1+ cells
    Thy1+ cells P0 1KIZTSDB2017R05TSDB2017R06Li C-H et al, 2017Thy1+ cells cultured for passages 0 (P0), 1 week for each passage
    Thy1+ cells P0 2KIZTSDB2017R07TSDB2017R08Li C-H et al, 2017Thy1+ cells cultured for passages 0 (P0), 1 week for each passage
    Thy1+ cells P1 1KIZTSDB2017R09TSDB2017R10Li C-H et al, 2017Thy1+ cells cultured for passages 1 (P1), 1 week for each passage
    Thy1+ cells P1 2KIZTSDB2017R11TSDB2017R12Li C-H et al, 2017Thy1+ cells cultured for passages 1 (P1), 1 week for each passage
    Thy1+ cells P2 1KIZTSDB2017R13TSDB2017R14Li C-H et al, 2017Thy1+ cells cultured for passages 2 (P2), 1 week for each passage
    Thy1+ cells P2 2KIZTSDB2017R15TSDB2017R16Li C-H et al, 2017Thy1+ cells cultured for passages 2 (P2), 1 week for each passage