| Basic information |
| Official Symbol | MRPS18A |
| Description | mitochondrial ribosomal protein S18A |
| Other Aliases | RP1-261G23.2, HumanS18b, MRP-S18-3, MRPS18-3, S18bmt |
| Other Description | 28S ribosomal protein S18-3, mitochondrial; 28S ribosomal protein S18a, mitochondrial; MRP-S18-a; S18mt-a; mitochondrial ribosomal protein S18-3 |
| Mutation type | Insert and frame-shift 132-133:P-R^A, Insert and frame-shift 192-193:L-S^C, premature termination 186:Q->TAG |
| Location | Scaffold000238_1:308514 328380 + |
| Wiki | Wikipedia GeneCard |
| Sequence |
| MRPS18A |
ATGGCGGCCCTCAAAGAGCTGGTGTCAGGCTGTGGGCGGCTGCTCCGAGG GCTCCTGGCGCGCCCGGCCGCGCCCGGCTGGCTTCGGCTTTCAGCTCGCG GGTTCAGGGAAGTGGTGGAGATCCAAGAAGGGAAGACAACTATACTCGAA GGCCGTATCACAGGGACTCCTAAGGAGAGTCCAGATCCCCCTAACCCCTC AGGCCAGTGCCCCATCTGCCGCTGGAACCTGAAGCACAAGTATAACTATG AGGATGTTTTGCTGCTCAGTCAATTCATCCGGCCTCACGGAGGCATGCTG CCCCGAAAGGTCACAGGCCTGTGTCAGGAAGAGCATCGCAAGATTGAGGA GTGTGTGAAGATGGCCCACCGAGCAGGTAGAAGGCCCCAGGGTACTAGAG GAGCAGAGGGCTGCAGGCACCATCTCTCCCCACCCACCTGCTCCTGTTCC AGCCCCCCCGAAAGGGAAGTGGCTATCCAGAGCATTAGTCATACCCATCC TCCAGTACCACTTCTCCACTCACTCTGGCCTCCTAAGAGCTAGAGACCTG CCCCTAATATGTCTTCCTTCCACTCAGGTCTGTTCCCAAATCACAGGCCT CGGCTTCCTGAAGGATTTGTTCCAAAAACCAAGCCCCGACTAAACCGCTA CCTGACCCGCTGGTCTCCCCGTTCTGTCAAGCCCATCTACAATAAAGGTC ACCGCTGGAACAAGGTGCACATGGCCGTGGGGTCACCCCTCCTGAAGGAC AACATCTCCTACTCAAGAACACCTTTGAAGCTGTATCAC |
| Alignment |
| Align specie | Pep length | Pep align begin | Pep align end | Mutaion type and postion |
| Human | 270 | 1 | 270 | Insert and frame-shift 132-133:P-R^A, Insert and frame-shift 192-193:L-S^C, Premature termination 186:Q->TAG |
Instructions:
*** -> premature termination codon; # -> frame shift
Alignment:
Human pep sequence --->
||||||||||||||||||||||
Treeshrew pep sequence --->
Treeshrew cds sequence --->
MetAlaAlaLeuLysAlaLeuValSerGlyCysGlyArgLeuLeuArgGlyLeuLeuAla
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
MetAlaAlaLeuLysGluLeuValSerGlyCysGlyArgLeuLeuArgGlyLeuLeuAla
ATGGCGGCCCTCAAAGAGCTGGTGTCAGGCTGTGGGCGGCTGCTCCGAGGGCTCCTGGCG
GlyProAlaAlaThrSerTrpSerArgLeuProAlaArgGlyPheArgGlu{V} >>>>
||||||||| ||| |||||| ||||||||||||||||||{|}
ArgProAlaAlaProGlyTrpLeuArgLeuSerAlaArgGlyPheArgGlu{V}++
CGCCCGGCCGCGCCCGGCTGGCTTCGGCTTTCAGCTCGCGGGTTCAGGGAA{G}gt
Target Intron 1 >>>> {al}ValGluThrGlnGluGlyLysThrThrIle >
9849 bp {||}|||||| |||||||||||||||||||||
++{al}ValGluIleGlnGluGlyLysThrThrIle++
ag{TG}GTGGAGATCCAAGAAGGGAAGACAACTATAgt
>>> Target Intron 2 >>>> IleGluGlyArgIleThrAlaThrProLysGluS
3033 bp ||||||||||||||| |||||||||||||
++LeuGluGlyArgIleThrGlyThrProLysGluS
agCTCGAAGGCCGTATCACAGGGACTCCTAAGGAGA
erProAsnProProAsnProSerGlyGlnCysProIleCysArgTrpAsnLeuLysHisL
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
erProAspProProAsnProSerGlyGlnCysProIleCysArgTrpAsnLeuLysHisL
GTCCAGATCCCCCTAACCCCTCAGGCCAGTGCCCCATCTGCCGCTGGAACCTGAAGCACA
ysTyrAsnTyrAsp >>>> Target Intron 3 >>>> AspValLeuLeuLeuSe
||||||||||| 3235 bp |||||||||||||||||
ysTyrAsnTyrGlu++ ++AspValLeuLeuLeuSe
AGTATAACTATGAGgt agGATGTTTTGCTGCTCAG
rGlnPheIleArgProHisGlyGlyMetLeuProArgLysIleThrGlyLeuCysGlnGl
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
rGlnPheIleArgProHisGlyGlyMetLeuProArgLysValThrGlyLeuCysGlnGl
TCAATTCATCCGGCCTCACGGAGGCATGCTGCCCCGAAAGGTCACAGGCCTGTGTCAGGA
uGluHisArgLysIleGluGluCysValLysMetAlaHisArgAlaGlyArgArgProTr
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
uGluHisArgLysIleGluGluCysValLysMetAlaHisArgAlaGlyArgArgProGl
AGAGCATCGCAAGATTGAGGAGTGTGTGAAGATGGCCCACCGAGCAGGTAGAAGGCCCCA
pGlyPro-ArgGlyAlaGluGlyCysArgHisSerLeuProThrGlnLeuProHisValS
||| #|||||||||||||||||||||||| ||| |
nGlyThr#ArgGlyAlaGluGlyCysArgHisHisLeuSerProProThrCysSerCysS
GGGTACTAAGAGGAGCAGAGGGCTGCAGGCACCATCTCTCCCCACCCACCTGCTCCTGTT
erAlaProProGlyArgLysValAspIleArgSerValAsnTyrThrHisHisProMetP
|| |||||| ||| ||| ||| ||| |||||| ||| |
erSerProProGluArgGluValAlaIleGlnSerIleSerHisThrHisProProValP
CCAGCCCCCCCGAAAGGGAAGTGGCTATCCAGAGCATTAGTCATACCCATCCTCCAGTAC
roThrPheProLeuProTrpAlaPheProLeuAlaProSerGluLeuGlnArgGluLeuG
|| ||| ||| |||
roLeuLeuHisSerLeuTrp---------------ProProLysSer***ArgProAlaP
CACTTCTCCACTCACTCTGG---------------CCTCCTAAGAGCTAGAGACCTGCCC
lnArgLeu-SerProLeuProArgHisSerGlyLeuLeuProAsnHisArgProArgLeu
#||| |||||||||||| |||||||||||||||||||||
roAsnMet#SerSerPhe------HisSerGlyLeuPheProAsnHisArgProArgLeu
CTAATATGCTCTTCCTTC------CACTCAGGTCTGTTCCCAAATCACAGGCCTCGGCTT
ProGluGlyValValProLysSerLysProGlnLeuAsn{Ar} >>>> Target Int
||||||||| ||||||||| |||||| ||||||{||} 2959 b
ProGluGlyPheValProLysThrLysProArgLeuAsn{Ar}++
CCTGAAGGATTTGTTCCAAAAACCAAGCCCCGACTAAAC{CG}gt
ron 4 >>>> {g}TyrLeuThrArgTrpAlaProGlySerValLysProIleTyrLys
p {|}||||||||||||||| ||| ||||||||||||||||||
++{g}TyrLeuThrArgTrpSerProArgSerValLysProIleTyrAsn
ag{C}TACCTGACCCGCTGGTCTCCCCGTTCTGTCAAGCCCATCTACAAT
LysGlyProArgTrpAsnArgValArgMetProValGlySerProLeuLeuArgAspAsn
|||||| ||||||||| ||| ||| |||||||||||||||||| ||||||
LysGlyHisArgTrpAsnLysValHisMetAlaValGlySerProLeuLeuLysAspAsn
AAAGGTCACCGCTGGAACAAGGTGCACATGGCCGTGGGGTCACCCCTCCTGAAGGACAAC
ValCysTyrSerArgThrProTrpLysLeuTyrHis
||||||||||||||| ||||||||||||
IleSerTyrSerArgThrProLeuLysLeuTyrHis
ATCTCCTACTCAAGAACACCTTTGAAGCTGTATCAC
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